Protein ZmABI48
ZmABI48 is a protein in the ABI3-VP1 family.
Information
TF Name: ZmABI48
Species: Maize
TF Family: ABI3-VP1
Gene Name(Synonym): ABI48
Uniprot ID: B4FXE4

Protein ZmABI48

ZmABI48 is a protein in the ABI3-VP1 family.

Overview of domains present in v5 transcripts
PF02362
Zm00001eb161000_T006
Zm00001eb161000_T001
Zm00001eb161000_T002
Zm00001eb161000_T003
Zm00001eb161000_T004
Zm00001eb161000_T005

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d044355DAPseq no logo sequence fimo position
Zm00001d044355DAPseq no logo sequence fimo position
Zm00001d044355ChIPseq no logo sequence fimo position
Zm00001d044355PChIPseq no logo sequence fimo position

Interactions where ZmABI48 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmABI48 is the target  
Expand


There are 25 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb161000_T006 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF02362
Hover here to show all domains

Nucleotide Sequence
Copy to clipboard
     
Expand

AATTTTCGAACCCTTCTGCCGTTCG...

GRMZM2G111123_T01 from maize genome v3


Related TFome: pUT3090

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Nucleotide Sequence
Copy to clipboard
     
Expand

AATTTTCGAACCCTTCTGCCGTTCG...

GRMZM2G111123_T02 from maize genome v3

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Nucleotide Sequence
Copy to clipboard
     
Expand

ATAGAAGGCCTCTTCATCTTCCTAT...

Zm00001d044355_T001 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Nucleotide Sequence
Copy to clipboard
     
Expand

ATAGAAGGCCTCTTCATCTTCCTAT...

Zm00001d044355_T002 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
IEIYFALQ

Nucleotide Sequence
Copy to clipboard
     
Expand

ATAGAAGGCCTCTTCATCTTCCTAT...

Zm00001d044355_T003 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEVSVKGSAS

Nucleotide Sequence
Copy to clipboard
     
Expand

ATTCTCCTTTCTCTAAACCGCCGCT...

Zm00001d044355_T004 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEVSVKGSAS

Nucleotide Sequence
Copy to clipboard
     
Expand

CTCTAAACCGCCGCTTCTGTTCTGA...

Zm00001d044355_T005 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Nucleotide Sequence
Copy to clipboard
     
Expand

GAGAAGGGAGATGGCGGAGGCGGTG...

Zm00001d044355_T006 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MVTLSTDVDFFFVVPLPSPFQIHFVSLVHELCAPPFSCRFLVVVYTISFLYFLGKIVLFQKF

Nucleotide Sequence
Copy to clipboard
     
Expand

GATTGCTTGGTCTTCCAACTGATTG...

Zm00001eb161000_T001 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKC
CRST

Nucleotide Sequence
Copy to clipboard
     
Expand

TTTCAATTTTCGAACCCTTCTGCCG...

Zm00001eb161000_T002 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Nucleotide Sequence
Copy to clipboard
     
Expand

TTTCAATTTTCGAACCCTTCTGCCG...

Zm00001eb161000_T003 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Nucleotide Sequence
Copy to clipboard
     
Expand

TTTCAATTTTCGAACCCTTCTGCCG...

Zm00001eb161000_T004 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKV
YIIRATLYFESDH

Nucleotide Sequence
Copy to clipboard
     
Expand

AATTTTCGAACCCTTCTGCCGTTCG...

Zm00001eb161000_T005 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MAEAVAVAYEEQRRRQIEMNKRKLEELQLHHLSAAVREAAAAAKPSSAKKRKAPVPRDAATEPPRRSDRLANLPEKPMYR
EVRVNLPFPEGSKSNARVPLDAANSVVVEPLRWSDRLANLPKKPMYHEDSDEERSYAISKAEELVQELGSSFPIFTQPMT
LSHVSGGFWLGLPKHFCREHLPKSDETITLVDEEDDESDTFYLAMQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKFKC
CRST

Nucleotide Sequence
Copy to clipboard
     
Expand

AATTTTCGAACCCTTCTGCCGTTCG...


Copyright © 2023 Grassius.org | Last updated: 2023-06-26